New release is out 🎉

v1.2.0 - Damson Dove

— a feature-packed minor release! Highlights: opt-in

--keep_unmapped

to control unmapped read handling,

--normalise_reads

for digital normalisation with BBNorm before assembly,

--annotation_metadata

to supply consensus annotations from a table, a new “Contig Taxonomy” + genome-completeness MultiQC chart, and

--use_host_filtered_reads

for routing host-filtered reads into refinement/variant-calling. Plus a

params

-passing refactor for cleaner subworkflows, updated modules/subworkflows, and several release/CI fixes. Thanks to everyone who reviewed and tested this cycle! 🙏 extreme teamwork

One thing I think of when I see the features. In #C02FC6VFQG1 we had to further decrease the memory

BBMap

sees by multiplying with 0.8 instead of the 0.95 that's in the nf-core module. It seems there's sometimes a surge in memory consumption right at the end of the run. We're now applying a similar (0.9) multiplier to the other BBMap modules we use in #C02FC6VFQG1.