Hi all ! As the ATAC-seq extensions are now well underway, I have started thinking about a short software article once the real-data validation is complete. The work currently in the pipeline includes: > • regulatory analyses: ROSE super-enhancer calling, TOBIAS footprinting, chromVAR and NucleoATAC; > • complementary genetic analyses from ATAC-seq reads: small-variant calling, CNV calling, mitochondrial analysis with mgatk, and telomere-content analysis with TelomereHunter2; > • Several reusable nf-core components are already submitted or under review, including NucleoATAC, TelomereHunter2, mgatk, and the TOBIAS and motifmatchr components. Would the nf-core/atacseq team be interested in developing this collaboratively? I would be very happy to include active contributors as co-authors according to their contributions, and to align the manuscript with the eventual integration into nf-core/atacseq.

how can I help ? testing the workflow ? adding code ?