Maxime Garcia
09/15/2026, 2:42 PM--publish_raw_fastq true if you need/want raw files, raw files will still be published if no trimming.
• Fixed AVITI runs without multiplexing producing empty FASTQs
• Template updated to nf-core v4.1.0, bclconvert to 4.5.4, multiqc to 1.35
thanks to:
@Dietmar Rieder @Anabella Trigila @Agrima Bhatt for contributions, and everyone I bothered for reviews