Just stumbled across github.com/reviewdog/action-suggester Takes a dirty git diff on a GitHub Actions runner (generated however) and turns it into comments with suggestions on a PR. Where have you been all my life?! Wonder if we could use this for

nf-core lint --fix

, even prettier etc? Might be a more elegant solution than messing around with complex GitHub actions permission sets and token handling? Only downside I guess is if it makes a lot of comments.

@nf-core fix linting

does everything in one pass, the above might require a lot of clicking for a lot of changes.

The eternal problem...