A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hello- as we continue to ramp up on Seqera Cloud, is there somewhere to find a list of issues and possible workarounds? I'm tripping over an uncaught
```at nextflow.cloud.google.secrets.GoogleSecretsProvider.getSecret(GoogleSecretsProvider.groovy:131)```


For the curious, more details are here: <https://github.com/broadinstitute/nf-send-mail-example#readme|github.com/broadinstitute/nf-send-mail-example#…>

Since I can't find the source code for `GoogleSecretsProvider`, I suppose one could always submit a patch to nextflow to add a try/catch around this line: <https://github.com/nextflow-io/nextflow/blob/8b07422b2220c339ac48f319b814186c0e60ce07/modules/nextflow/src/main/groovy/nextflow/secret/SecretsLoader.groovy#L71|github.com/nextflow-io/nextflow/blob/…/SecretsLoader.groovy#…>

For Seqera Cloud, there is some functionality in Nextflow that comes from non-OSS plugins. If you can't find the source code, it's entirely possible that the traceback is coming from there.

For these, the options are:
• Contact support (will definitely get a response and hopefully a fix)
• Post on <http://community.seqera.io|community.seqera.io> (better for this kind of thing than slack, as posts with relevant tags get auto-posted into the Seqera slack :eyes: :shushing_face: )
• Post here, as you did :slightly_smiling_face: (in which case I usually poke people to respond).

Also contacting support does not have to be mutually exclusive: if you're a Seqera customer then I would basically always recommend doing this. Our support team are awesome, and it's one of the main benefits of being a customer :slightly_smiling_face:

<@U08RY2KQ7M1> Hi! I'm from Seqera support, and we've just sent you a reply back on the ticket you've submitted re: the above issue.

I've confirmed there is a bug in the Google secrets provider, and the fix for that lives in a Seqera-maintained plugin codebase. I've included more details in your Support Ticket, and happy to help answer questions in the meantime!