Hi all, is there a way to run only specific proces...
# nostupidquestions
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Hi all, is there a way to run only specific processes/subworkflows of an nf-core pipeline without executing the full pipeline? Context: I ran
nf-core/rnaseq v3.11.1
on a combined sample cohort on Seqera. I now want to re-run just the merge/report step without re-doing alignment/quantification (the most time consuming + cost consuming step) as the cohort came from 7 different datasets, so original 1 merged metrics doesn't work. I tried
-resume
the run with the the updated sample sheet, but looks like it still run from scratch instead of hitting cache. Alternatively, can I divided merged.gene_counts.tsv into different dataset? Is there a recommended approach for this kind of partial re-run? Thanks!