Zoey
09/02/2026, 5:56 PMnf-core/rnaseq v3.11.1 on a combined sample cohort on Seqera. I now want to re-run just the merge/report step without re-doing alignment/quantification (the most time consuming + cost consuming step) as the cohort came from 7 different datasets, so original 1 merged metrics doesn't work. I tried -resume the run with the the updated sample sheet, but looks like it still run from scratch instead of hitting cache.
Alternatively, can I divided merged.gene_counts.tsv into different dataset?
Is there a recommended approach for this kind of partial re-run? Thanks!