Hi, is there a way to run only specific processes/...
# rnaseq
z
Hi, is there a way to run only specific processes/subworkflows of an nf-core/rnaseq pipeline (specifically RSEM_MERGE_COUNTS and MULTIQC), without executing the full pipeline (The per-sample outputs already exist)? Context: I ran
nf-core/rnaseq v3.11.1
on a combined sample cohort on Seqera. I now want to re-run just the merge/report step without re-doing alignment/quantification (the most time consuming + cost consuming step) as the cohort came from 7 different datasets, so original 1 merged metrics doesn't work. I tried
-resume
the run with the the updated sample sheet , but looks like it still run from scratch instead of hitting cache. Is there a recommended approach for this kind of partial re-run? Thanks!