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Iso-Seq module updates - Add isoseq/tag (replaces...
# request-review
m
Mahesh Binzer-Panchal
09/02/2026, 3:54 PM
Iso-Seq module updates - Add isoseq/tag (replaces isoseq3/tag, moved to the isoseq package/26.2.0):
github.com/nf-core/modules/pull/12868
- Deprecate isoseq3/tag → isoseq/tag:
github.com/nf-core/modules/pull/12869
- Bump isoseq/refine 4.0.0 → 26.2.0:
github.com/nf-core/modules/pull/12870
- Add isoseq/cluster2 (replaces legacy cluster, upstream's recommended path now):
github.com/nf-core/modules/pull/12871
- Deprecate isoseq/cluster → isoseq/cluster2:
github.com/nf-core/modules/pull/12872
- Add isoseq/groupdedup (single-cell PCR dedup):
github.com/nf-core/modules/pull/12873
PRs 12869 and 12872 are stacked on 12868/12871 respectively — please review those first.
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