Daniel Lundin
09/02/2026, 5:38 AMraxmlng module to 2.0. When looking at that it's obvious to me that the tool supports different modes and should have subcommands, e.g. raxmlng/search. There are other pipelines using the original module so replacing the original 1.x raxmlng with 2.0 raxmlng/search would be disruptive. Am I allowed to add raxml/search in parallel to the current? (I posted an issue too: github.com/nf-core/modules/issues/12865)Daniel Lundin
09/02/2026, 5:45 AMraxmlng/search module in parallel to raxmlng as it specifies that the alternative must be present when deprecating the old module.