@Jim Downie I thought a bit more, and my only concern is the name. Pipelines modules doesn't match what we're doing. It's more piped modules I believe

I definitely don't want

pipeline

, it is already used too much

multi-tool modules?

I like that. @Jim Downie if it's ok for you, I'll use that in the blog post I'll be writing Monday

I think I called the actual module "samtools/multicommand" which I think got the idea across effectively

also works 👍🏻