Dear #C02FC6VFQG1 people, what do I need to do to put mag in #C02FC6VFQG1, cf https://github.com/nf-core/fetchngs/issues/376

I'm not sure I understand. Metatdenovo does de novo assembly, like the mag pipeline, but does not reconstruct MAGs. It is primarily meant for metatranscriptomes. Are you thinking of how to chain, i.e. output param settings etc?

NO idea, I guess I will wait for Evangelos to come back from vacation

Now I saw your post in #CE9MS66BS, so this was maybe a typo. Particularly after this week's bytesize, I think the downstream pipeline should provide the glue for chaining rather than the upstream. And if nf-meta can do this for us, there's no need for pipelines to chase each others interfaces.

There is definitely no need, and it can be done by users manually by hand, or by in-house python parsers...but, for pipelines that are easy to produce downstream pipeline samplesheets, I would say go ahead and create those. But again, completely optional (especially for pipelines that are a pain to chain)

I will, next week. On vacation

Enjoy!!!

Thanks, I needed that! Will look right away.