:x: sarek/test_full_germline_aws failed :crying_ca...
# sarek_devf
Full test notifications
08/12/2026, 8:15 PM❌ sarek/test_full_germline_aws failed 😿 Run Name
sarek_test_full_germline_aws Duration
4h 26m 55s Status
❌ Failed Error Message
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8:14PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
8:14PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-06baed01bcfadc6af instance-type=m6id.24xlarge
8:14PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
grep: write error: Broken pipe
2026-08-12 20:14:48.013886: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2026-08-12 20:14:48.014219: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-08-12 20:14:48.017349: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-08-12 20:14:48.054917: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
/usr/local/lib/python3.10/dist-packages/google/api_core/_python_version_support.py:275: FutureWarning: You are using a Python version (3.10.12) which Google will stop supporting in new releases of google.api_core once it reaches its end of life (2026-10-04). Please upgrade to the latest Python version, or at least Python 3.11, to continue receiving updates for google.api_core past that date.
warnings.warn(message, FutureWarning)
2026-08-12 20:14:48.899602: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I0812 20:14:49.970579 140514642674112 run_deepvariant.py:623] Creating a directory for intermediate results in tmp
***** Intermediate results will be written to tmp in docker. ****
I0812 20:1... Copy code
nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws -params-file '<https://api.cloud.seqera.io/ephemeral/aAFAZapDDgXdxrVq53zNNQ.json>' -with-tower -r dev -profile test_full_germline_aws2 Views