❌ sarek/test_full_germline_ncbench_agilent failed 😿 Run Name sarek_test_full_germline_ncbench_agilent Duration 2h 34m 4s Status ❌ Failed Error Message

(more omitted..)
2026-08-12 16:42:39.826870: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I0812 16:42:41.458583 140557727658432 run_deepvariant.py:623] Creating a directory for intermediate results in tmp
***** Intermediate results will be written to tmp in docker. ****
I0812 16:42:41.459691 140557727658432 run_deepvariant.py:894] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': '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.eyJpc3MiOiJDTj1TZXFlcmEgQ0EsT1U9U2VxZXJhIENBLE89U2VxZXJhIEluYy4sTD1CYXJjZWxvbmEsU1Q9QmFyY2Vsb25hLEM9RVMiLCJpYXQiOjE3ODY1NTI2NDMsIm5iZiI6MTc4NjU1MjY0MywiZXhwIjoxNzg2NjM5MDQzfQ.PeoNu8m8AEMh1sg5B8R9FefJcZNBdzxWQO5jY9FyQyjNX96YtGzR-JlFg4RnoPs5jumLvEZ-zqWSS2w6wDUnQg', 'AWS_EXECUTION_ENV': 'AWS_ECS_EC2', 'PYTHONNO...

Command Line

nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_ncbench_agilent -params-file '<https://api.cloud.seqera.io/ephemeral/AY7hdV0YGMgDVBsOhjm0iQ.json>' -with-tower -r dev -profile test_full_germline_ncbench_agilent

Aug 12, 2026 at 4:43 PM