A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *proteinfold/test_full* failed :crying_cat_face: *Run Name*
maniac_engelbart *Duration*
38m 11s *Status*
:x: Failed *Error Message*
```(more omitted..)
2026-08-11 14:51:35,835 Running colabfold 1.5.5 (e8ebd9a612b9da5fe12bbbc09513d5c52a9af633)
2026-08-11 14:51:43,927 Running on GPU
2026-08-11 14:51:44,243 Found 5 citations for tools or databases
2026-08-11 14:51:44,244 Query 1/1: H1065 (length 225)

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2026-08-11 14:51:47,680 Could not generate input features H1065: Calling np.sum(generator) is deprecated.Use np.sum(np.fromiter(generator)) or the python sum builtin instead.
Traceback (most recent call last):
  File "/usr/local/lib/python3.12/site-packages/colabfold/batch.py", line 1343, in run
    = generate_input_feature(query_seqs_unique, query_seqs_cardinality, unpaired_msa, paired_msa,
      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.12/site-packages/colabfold/batch.py", line 855, in generate_input_feature
    input_feature = process_multimer_features(features_for_chain, min_num_seq=max_seq + 4)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.12/site-packages/colabfold/batch.py", line 774, in process_multimer_features
    np_example = feature_processing.msa_pairing.merge_chain_features(
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.12/site-packages/alphafold/data/msa_pairing...``` *Command Line*
```nextflow run '<https://github.com/nf-core/proteinfold>' -name maniac_engelbart -params-file '<https://api.cloud.seqera.io/ephemeral/J1X7CTSDbAcAcOYXTMyztQ.json>' -with-tower -r a414fd1368009500b66761e37e7cde80366a45e9 -profile test_full_colabfold_multimer``` Aug 11, 2026 at 2:51 PM