Hi! First of all, congrats <@U05Q6V057LK> and coll...
# mag
j
Hi! First of all, congrats @Diego Alvarez Saravia and collaborators for the impressive new release. I'm running in an error with BUSCO and GUNC and wanted to know if you'd encountered this before or know a quick fix, before I open a detailed issue on github.
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ERROR ~ Error executing process > 'NFCORE_MAG:MAG:BIN_QC:BUSCO_BUSCO (18)'

Caused by:
  java.util.ConcurrentModificationException
The most similar case I found online is this: github.com/nextflow-io/nextflow/issues/5826#… 26.04.4 build 12445 with SLURM as executor
d
Hi @Jonathan Rondeau-Leclaire! Which version of mag are you running? I fixed an error like that one here: github.com/nf-core/mag/pull/1087, caused because
.sort()
changes the list inplace
j
commit bed815ef56586c08695bf94943d9ad6f1dedd387 , I'm afraid of breaking my cache if updating to 5.5.0, I'm so close to finishing this massive assembly project!
I'll upgrade to that commit specifically see if it fixes it
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good news, it only broke the cache for 3 processes: MAXBIN2, METABINNER_BINS and SPLIT_FASTA; so it's not a full redo. I'll let you know if it happens again. Thanks for the cue !
d
Hope that solves it!
j
UH OH
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d
Well, if it doesn't solve it, we can try with what @James Fellows Yates did on #C062H82UCRG I guess 😅