New pipeline version 2.5.0 out! with a bug fix for multi-sample runs that went through merging, along with some other fixes that @Yixuan Yang pointed out! Also allowing a new family generation algorithm,

mgnifam

, which promises to produce more refined models and alignments due to its iterative nature (future work to benchmark against current standard way of producing families, to quantify stats). Enable it with

--family_generation_algorithm iterative

See the changelog here: github.com/nf-core/proteinfamilies/…/2.5.0