A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_germline_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_germline_aws *Duration*
6h 53m 8s *Status*
:x: Failed *Error Message*
```2:17PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
2:17PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-038a0f29e8504f91d instance-type=m6id.4xlarge
2:17PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
2:22PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
2:27PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
2:32PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
2:37PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
2:42PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
2:47PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
2:48PM ERR [seqera-fusion] Failed to read directory entries. Check the `error` field for the underlying cause and report this issue if it persists. error="element not found" goid=258 operation=ReadDir path=/s3/nf-core-awsmegatests/work/sarek/work-dev/test_full_germline_aws/39/ae7926b03d5495ffec3df6e480a524/.fusion/tmp/hsperfdata_root
FUSION_GPU_USED=false``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws -params-file '<https://api.cloud.seqera.io/ephemeral/tOVXYwp9Mbhn6MnIHV79rQ.json>' -with-tower -r dev -profile test_full_germline_aws``` Aug 10, 2026 at 4:48 PM