Ok, I got through the bulk of them. Both @James Fellows Yates and @Jonas S commented on the input samplesheet -- the reason we kept the unneeded columns (fasta) and checked for unsupported types (long read platforms) was so users could directly use the same samplesheet they made for taxprofiler. I'm happy to remove it if a problem though, just let me know. And let me know if there are any I resolved that you don't like how they were resolved. @Yixuan Yang could you check out the comment on the metro diagram? @Vini Salazar can you check out of the comment on the modules comments for eggnog mapper?

@Yixuan Yang I might have a go on the metro diagram since it's a central element of the poster I'm working on, will let you know when I have an update

@Nick Waters Did you see my comment ingithub.com/bioconda/bioconda-recipes/pull/60688? bgruening thumped up for the idea of bumping the meta yaml build and updating the tar.gz to the “final” alpha release

Thanks @Jonas S! Can we add this as a v1.1 todo item? This review process has already stretching longer than I promised my boss, and I'm worried their patience (and therefore, my continued ability to support) is going to run out completely. I need to get back to work on my actual research.

From my side ok 👍 please open issue regarding this and mark to v1.1.0 release