A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

I am looking to version bump the `fastp` module, but it uses a wave container
<https://github.com/nf-core/modules/blob/master/modules/nf-core/fastp/main.nf#L8|github.com/nf-core/modules/blob/…/main.nf#…>

What is the process for this?

<https://seqera.io/containers/?packages=bioconda::fastp=1.3.6|seqera.io/containers?packages=…> select the tool version in the drop down, then click on "get container" to get the new container

Screenshot 2026-07-31 at 17.43.21.png

and to get the singularity container change Docker to Singularity

( you can also use the wave cli if you prefer) <https://nf-co.re/docs/developing/containers/seqera-containers|nf-co.re/docs/developing/containers/seqera-containers>'

Whoa, `nf-core modules bump-versions fastp` is doing this for me!  :mind_blown:

oh nice! I haven't tried the new version yet

<https://github.com/nf-core/modules/pull/12476|github.com/nf-core/modules/pull/12476>