Hello everyone, I also ran into the exact same issue as Victor above. As it stands I think that the somatic tumor-only mode of the pipeline isn't working as-is

Did you try his solution? https://nfcore.slack.com/archives/C05URH17X5Z/p1780487487338299?thread_ts=1780486259.016929&cid=C05URH17X5Z

Hello! I used a similar fix, I'll mention it when I raise the issue at the repo 🙂