A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

The CI runners will periodically get stuck for me and keep the jobs in the queue for 24+ hours without the ability to cancel it. I think the culprit this time is the `confirm-pass` task <https://github.com/nf-core/sarek/actions/runs/30467438906/job/90629187363|here>. Is there a consistent way to get out of this? Thank you!

we are experiencing some issues on the AWS side and are investigating

Thanks, Rike for the update! I'm following the thread in the other channel. I am hoping it gets resolved before the next Sarek release so I can get the rest of my PRs through.

I think otherwise we'll need to start working on some sort of honor system / we'll run the GPU tests on 2 different machines or sth. Don't want the release to be blocked by this :melting_face:

Agreed! And I have local GPUs I am testing with in the meantime.

Hey Rike, I'm hoping to get my last two PRs merged soon. Is there a path you can recommend to complete the GPU CI testing while the runners are down? Or are there any updates on the progress of fixing the runners?

we just got it fixed. I am merging the runners back into dev