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Hi! Is there a way to introduce options into the c...
# scrnaseq
m
Hi! Is there a way to introduce options into the cellranger multi config csv that is automatically generated by the pipeline? I have to disable the library compatibility check and error points me to do it there.
f
Hi there, Right now, if I am not mistaken, it is not possible. However there is a PR where Mahesh helped re-shaping the module to groovy. Meaning, have options for specific technologies would be possible: github.com/nf-core/modules/pull/12152#… the code is mostly ready ... but we are lacking people that really understand the PR to test it ... Do you think you could give the code in the PR a test and maybe a comment so we can get that closed?
Once merged, then we could bring it to the scrnaseq pipeline itself
but, would need a issue describing exactly what is the new feature wanted and how is the expected behaviour ... with a testing dataset if possible
m
Hi! Thanks for the information!
I am not sure I have the skills to test that, but I will try...
👍🏽 1
f
I tested, and I if the code / option has to go inside the CSV then it will not work as is, the functionality must be added
so, we would need to have the issue describing the feature to work on it
m
Ok, I'll do my best to report it!
Thanks
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