A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *seqinspector/test_full* failed :crying_cat_face: *Run Name*
lonely_moriondo *Duration*
6m 8s *Status*
:x: Failed *Error Message*
```The following invalid input values have been detected:

* --input (<https://raw.githubusercontent.com/nf-core/test-datasets/seqinspector/full_tests/SampleSheet.csv>): Validation of file failed:
	-&gt; Entry 2: Error for field 'fastq_1' (<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_...stq/Bpacificus-ATCC10987-rep2-sWGS-MiSeqi100-241111_S2_L001_R1_001.fastq.gz>): the file or directory '<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_PairedEnd/Fastq/Bpacificus-ATCC10987-rep2-sWGS-MiSeqi100-241111_S2_L001_R1_001.fastq.gz>' does not exist (FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz')
	-&gt; Entry 2: Error for field 'fastq_2' (<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_...stq/Bpacificus-ATCC10987-rep2-sWGS-MiSeqi100-241111_S2_L001_R2_001.fastq.gz>): the file or directory '<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_PairedEnd/Fastq/Bpacificus-ATCC10987-rep2-sWGS-MiSeqi100-241111_S2_L001_R2_001.fastq.gz>' does not exist (FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz')
	-&gt; Entry 7: Error for field 'fastq_1' (<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_...stq/Bpacificus-ATCC10987-rep7-sWGS-MiSeqi100-241111_S7_L001_R1_001.fastq.gz>): the file or directory '<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_PairedEnd/Fastq/Bpacificus-ATCC10987-rep7-sWGS-MiSeqi100-241111_S7_L001_R1_001.fastq.gz>' does not exist (FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz')
	-&gt; Entry 17: Error for field 'fastq_1' (<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSeq_.../Rsphaeroides-ATCC17023-rep1-sWGS-MiSeqi100-241111_S17_L001_R1_001.fastq.gz>): the file or directory '<https://github.com/nf-core/test-datasets/raw/seqinspector/full_tests/MiSe>...``` *Command Line*
```nextflow run '<https://github.com/nf-core/seqinspector>' -name lonely_moriondo -params-file '<https://api.cloud.seqera.io/ephemeral/xHdCs8g3q8E9ueQ8hu4oxg.json>' -with-tower -r dev -profile test_full``` Jul 24, 2026 at 4:23 PM