Hi. I'm planning to update the fastp version in the nf-core/fastp module. While linting the warning

bioconda_version: Conda version not specified correctly: bioconda::fastp=1.3.6

keeps popping up. it seems whatever module i check, the warning also appears there as well. How do i need to format

environments.yml

to make this warning vanish?

$ cat modules/nf-core/fastp/environment.yml
---
# yaml-language-server: $schema=<https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json>
channels:
  - conda-forge
  - bioconda
dependencies:
  # renovate: datasource=conda depName=bioconda/fastp
  - bioconda::fastp=1.3.6

did you run

nf-core modules bump-version fastp

?

nf-core 4.0.2 didn't know the function bump-version. Have to check it. Maybe it solves all the work i wanted to do in one command... oops

i would recommend to do it with the latest dev version of tools actually (

pip install --upgrade --force-reinstall git+<https://github.com/nf-core/tools.git@dev>

) then you get the containers also updated correctly

nf-core/tools version 4.0.3.dev0 - <https://nf-co.re>

Conda version not specified correctly: modules/nf-core/fastp/environment.yml

it keeps it's opinion

weird, i copy pasted yours and it was fine... let me check if there might be some caching issue on your side

Wouldn't be surprised, if something strange happens on our IT...

DEBUG    Popen(['git', 'version'], cwd=[redacted]/scripts/nf-core.modules.fork.260720, stdin=None, shell=False, universal_newlines=False)                                                                                                              cmd.py:1406
DEBUG    Popen(['git', 'version'], cwd=[redacted]/scripts/nf-core.modules.fork.260720, stdin=None, shell=False, universal_newlines=False)                                                                                                              cmd.py:1406
DEBUG    sys.platform='linux', git_executable='git'                                                                                                                                                                                                                                                          util.py:497
Pulling from 'nf-core/modules' (<https://github.com/nf-core/modules.git>) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ Waiting for response
DEBUG    Popen(['git', 'version'], cwd=[redacted]/.config/nfcore/nf-core/modules, stdin=None, shell=False, universal_newlines=False)                                                                                                                                                                    cmd.py:1406
DEBUG    Popen(['git', 'fetch', '-v', '--progress', '--', 'origin'], cwd=[redacted]/.config/nfcore/nf-core/modules, stdin=None, shell=False, universal_newlines=True)                                                                                                                                   cmd.py:1406
DEBUG    Popen(['git', 'checkout', 'master'], cwd=[redacted]/.config/nfcore/nf-core/modules, stdin=None, shell=False, universal_newlines=False)                                                                                                                                                         cmd.py:1406
DEBUG    Popen(['git', 'merge', 'origin/master'], cwd=[redacted]/.config/nfcore/nf-core/modules, stdin=None, shell=False, universal_newlines=False)                                                                                                                                                     cmd.py:1406
DEBUG    Got '[redacted]/.config/nfcore/nf-core/modules' as path                                                                                                                                                                                                                                       utils.py:509
DEBUG    Found a config cache, loading: [redacted]/.nextflow/nf-core/wf-config-cache-9f4bce35ba6f9f759cbf54fa7.json                                                                                                                                                                                    utils.py:543
DEBUG    Using config file: [redacted]/.config/nfcore/nf-core/modules/.nf-core.yml                                                                                                                                                                                                                    utils.py:1287
DEBUG    Got '.' as path                                                                                                                                                                                                                                                                                    utils.py:509
DEBUG    Found a config cache, loading: [redacted]/.nextflow/nf-core/wf-config-cache-9f4bce35ba6f9f759cbf54fa7.json                                                                                                                                                                                    utils.py:543
DEBUG    Using config file: .nf-core.yml                                                                                                                                                                                                                                                                   utils.py:1287
DEBUG    Got '.' as path                                                                                                                                                                                                                                                                                    utils.py:509
DEBUG    Found a config cache, loading: [redacted]/.nextflow/nf-core/wf-config-cache-9f4bce35ba6f9f759cbf54fa7.json                                                                                                                                                                                    utils.py:543
DEBUG    Using config file: .nf-core.yml                                                                                                                                                                                                                                                                   utils.py:1287
DEBUG    Starting new HTTPS connection (1): <http://api.anaconda.org:443|api.anaconda.org:443>                                                                                                                                                                                                                                  connectionpool.py:1062
DEBUG    Printing bump_versions results

looks like it. (maybe because of the "defaults" channel fiasco. try to update it then trough a github codespace