We added bwamem2 a long time ago but never made it the default. i am tempted to do this now. Does anyone have strong opposition to this? or done enough benchmarking to back this?
100 rainbow 2
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Simon Pearce
07/21/2026, 10:21 AM
bwamem2 is outdated now though
Simon Pearce
07/21/2026, 10:21 AM
we have bwamem3, bwamem2-rust, minibwa, and I'm fairly sure another one
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Rike Hanssen
07/21/2026, 10:24 AM
did you test those alternatives?
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Simon Pearce
07/21/2026, 10:30 AM
Not at all yet 😉
Simon Pearce
07/21/2026, 10:31 AM
But yeah, I think making bwamem2 the default is probably sensible, over plain bwa mem