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Anyone using bwa-mem in their pipelines? Maybe che...
# pipeline-maintainers
p
Anyone using bwa-mem in their pipelines? Maybe check out this.
d
Heng Li was already writing a faster bwa mem/mem2 alternative: github.com/lh3/minibwa (2x faster than mem2 and over 3x faster than mem)
m
Looking into all bwa mem things
p
Yeah I posted that one here - not byte identical output though so harder to do a clean swap
Ah sorry that was rammap (minimap rewrite) not minibwa
Too many aligner rewrites lolsob
😆 3
The output minibwa alignment is also not identical to bwa-mem.
j
Nice, do we have containers for bwa-mem3-rs? I cannot find on quay
p
Doesn't look like it's on bioconda yet. Installation docs just say cargo or binaries on the GitHub releases
...and there are no GitHub releases
I asked
d
I swear I saw releases in the morning
They renamed the repo to bwa-mem4 now
Maybe they deleted all because of that?
p
Ah possible
They've added one now
f
j
chaos
p
This looks much more carefully done, and Fulcrum have an excellent track record. So I'd feel a lot more confident with this one
party this 1
Plus it's already on bioconda etc.
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