Hi, I have some issue with my SAREK pipeline. I have submitted 20 samples but each time I run the pipeline, there's only 1 sample shows variant calling result. Each time, it is different sample. The run was also shown to complete successfully. Does anyone have the same issue? or does anyone knows what could be the reason to this and how I can solve this issue? Interestingly, I also got this error ERROR ~ Failed to invoke

workflow.onComplete

event handler

Hi, @Samantha Sheng! Slack uses channels to organise discussions. Press the

...

more option on the left sidebar. Then hover over Your organisation, and finally select Channels to browse. Each nf-core pipeline has it’s own channel (e.g. #CE8SSJV3N). Please post any questions about specific pipelines in the relevant channel. If you’re not sure where to post your message, please ask @Rike Hanssen for help.

Let’s take this to #CGFUX04HZ Also please provide moreinfo 🙂

To help we'd love a few more details please: 1. The Nextflow command you used to launch the pipeline 2. Any custom Nextflow config files 3. The full error message 4. The corresponding

.nextflow.log

file, where you are running the analysis. Remember to use triple backslashes on their own lines for code blocks. Also take a look at https://nf-co.re/usage/troubleshooting for more information on debugging failed pipelines. Thanks!