HI! Hope you can help me with a pipeline getting frozen. Im running rnaseq pipeline and finding an issue previously reported (link below) but without a proper solution. In the rnaseq github they pointed out this slack as they dont think is a pipeline specific issue Original thread: https://nfcore.slack.com/archives/CE8SSJV3N/p1715651026443199 The point is, im running the rnaseq on a high RAM cpu (standalone machine) and after few hours (or even days) the process get stuck without prompting any error (and making no progress) I tried to batch from 110 sampels to 10, but same thing happened (just earlier on the 10 samples batch). The execution trace does not report any failure, it just freezes and do not update anymore , and the nextflow log repeats over and over a set of lines (and it DOES update, but just repeating the same). Please find attached an example:

g-26 12:24:00.053 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 23 -- tasks to be submitted are shown below
~> TaskHandler[id: 73; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (A189_POSTm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/59/f394ecc3e8372f1118ab25e37b882b]
~> TaskHandler[id: 69; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (A187_POSTm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/fb/3b0c6e6abb0cd30a5b2819761fb678]
~> TaskHandler[id: 71; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (FACE34_PRE); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/1f/4a4bf3c2a95d8ff11ec3ea1bc9af81]
~> TaskHandler[id: 65; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (A193_POSTm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/a9/e51ad5f840f0993b8c547b8b134e45]
~> TaskHandler[id: 74; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (FACE11_POSTm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/89/fcc28cf8ffd5b422bc1d5d14e73f8c]
~> TaskHandler[id: 63; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (FACE13_PREm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/55/3e86b42259706eea46cc4e8effc944]
~> TaskHandler[id: 68; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (A187_PRE); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/e7/4f68e2b7ea07112071514853a6a38f]
~> TaskHandler[id: 62; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (FACE34_POSTm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/a9/8c39378f80e5eb3ac879ad3a8e8af7]
~> TaskHandler[id: 70; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (FACE11_PREm); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/4b/2c31d2f7d599920b395f8a085a2040]
~> TaskHandler[id: 66; name: NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (FACE13_POST); status: NEW; exit: -; error: -; workDir: /media/bioinfo/DATAII/Conchi_Nunez/X204SC23063344-Z01-F001/work/34/2c3b625c1ef1cb5b65e96481945aca]
.. remaining tasks omitted.