Julia Douglas Freitas
09/06/2024, 4:21 PMnf-core download and singularity. I ran nf-core download ampliseq --container-system singularity , followed by nextflow run nf-core-ampliseq_2.11.0/2_11_0 -profile test,singularity --outdir ~ . That resulted in this error: FATAL: While checking container encryption: could not open image -: failed to retrieve path for -: lstat -: no such file or directory . I originally selected the option to append to my NXF_SINGULARITY_CACHE, but nothing was downloaded to that directory. I retried the download and chose the 'copy' option, which downloaded the singularity images to the singularity cache location. However, I still get the same fatal error.
@Daniel Straub recommended that I try with another pipeline, and I got the same error for bacass.