Maybe we can all coordinate?

Absolutely, coordination sounds like a good idea. Have you and your colleague started with this, @Hesham Almessady?

They already have added

flye

to a fork of the pipeline, but on a quite out of date version of mag.

I'll try to attend this Thursday. I'm guessing that this fork will be hard to merge with nf-core, since it's forked on an out of date version? My collegues and I could make a new fork, with the intention to merge with nf-core once we are done.

Yes exactly, we discussed with Hesham and his colleague that we would have to change a lot of things in the general structure (move a lot of thigns to subworkflows etc). to get this work properly, so were going to start from scratch. If you are all working together towards the same goal, I think it makes most sense to coordinate, and not work on forks but directly on the mag repo (on a specific fork). We should discuss how to distribute coordinate, tasks etc. Do you have a rough outline of what you want you planned to add more specifically? Then we can either talk on Thursday (@Hesham Almessady do you think you and @Zhi-Luo Deng can also make it again?)

Great! I, and possibly one of my collegues, will attend on Thursday. We will have a chat between us what we want to add more specifically. But in essence we are interested in a long-read-only track, with the possibity of using flye as an assembler.

Then we can either talk on Thursday (@Hesham Almessady do you think you and @Zhi-Luo Deng can also make it again?)

Thank you for inviting me to the channel. I will have another meeting this week sorry🤦