A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

<#CGFUX04HZ> sorry what is this error `cat sarek.e`
`Nextflow 24.04.4 is available - Please consider updating your version to it`
`Project `nf-core/sarek` is currently stuck on revision: 3.4.2 -- you need to explicitly specify a revision with the option `-r` in order to use it`
`/tmp/slurmd/job8416198/slurm_script: line 69: -profile: command not found`  Thanks for any help

<https://nf-co.re/docs/usage/troubleshooting/stuck_on_revision>

Also it's saying you should updated Nextflow if possible

And it's also got an error about `-profile` which I guess is probably due to you breaking the submission command over several lines and missing a `\` to make it a single command in bash. So you'll have a line that starts with `-profile` which is not valid bash.