#CGFUX04HZ Hi For running controlfreec I get such error

Error: chromosome EBV present in your genome.fa.fai file was not detected in your file with capture regions Focus_GRCh38.bed

Please solve this issue and rerun Control-FREEC

For example, you can remove chromosome EBV from your genome.fa.fai

Will exit

This is how my main code looks

nextflow run nf-core/sarek \

--input annotation.csv \

--outdir cnv \

--genome NCBI.GRCh38 \

--skip_tools markduplicates \

--tools controlfreec \

--step variant_calling \

--wes true \

--intervals Focus_GRCh38.bed \

--mappability /flask/reference/Genomics/aws-igenomes/Homo_sapiens/GATK/GRCh38/Annotation/Control-FREEC/out100m2_hg38.gem \

-profile crick \

-r 3.4.2 \

-resume

Please could you suggest a solution please? Thanks a lot

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