Hi everyone, I’m trying to use the

--extra-trimgalore-args

param on version 3.12 with the following command :

nextflow run nf-core/rnaseq -r 3.12.0 \
--input '/sfs/9/ws/qealk01-QTRRI/data/monocytes_1/samplesheet.csv' \
--outdir '/sfs/9/ws/qealk01-QTRRI/Runs/monocytes_August2024' \
--fasta '/sfs/9/ws/qealk01-QTRRI/refs/GRCh38_Orf_genome.fa' \
--gtf "/sfs/9/ws/qealk01-QTRRI/refs/Homo_sapiens_Orf.GRCh38.111.gtf" \
--aligner star_salmon \
--extra-trimgalore-args "--clip_r2 3" \
-resume \
-c  '/sfs/9/ws/qealk01-QTRRI/refs/custom.config' \
-profile cfc

but I keep getting this at the beginning of my run :

WARN: Found unexpected parameters:
* --extra-trimgalore-args: --clip_r2 3
- Ignore this warning: params.schema_ignore_params = "extra-trimgalore-args"

would anyone know what’s going on?

it should be

--extra_trimgalore_args

(underscores not hyphens)