Hi everyone, This is my first time running rna-seq. I ran it by docker, and it seemed to be good at very first line. However, the error is popping up. I do not know how to solve it. Could you please help guide me how to fix this? I run this on HPC and also test with full test.

A

command not found

is usually a sign that the containers/virtual env is not working. You said you ran it by docker, but I don't see a

-profile docker

or a config in your command line

The warning on the nextflow one is telling you everything you need to know 🙂

Thank you, Maxime and Jonathan. I added

profile docker

and it worked well. I will try to learn more about nf-core and nextflow. ^__________^