Nicolas Vannieuwkerke
01/23/2023, 1:32 PMnf-validation plugin on my local machine but keep getting this error after the ./gradlew compileGroovy and running with `./launch.sh run -plugins nf-validation ../dummy_pipeline/main.nf`:
Missing '.launch.classpath' file -- create it by running: ./gradlew exportClasspath
I've tried running ./gradlew exportClasspath but that gives another error:
FAILURE: Build failed with an exception.
* What went wrong:
Task 'exportClasspath' not found in root project 'nf-validation' and its subprojects.
Does anyone know what's going wrong here? I'm using this version of JAVA:
openjdk version "1.8.0_92"
OpenJDK Runtime Environment (Zulu 8.15.0.1-linux64) (build 1.8.0_92-b15)
OpenJDK 64-Bit Server VM (Zulu 8.15.0.1-linux64) (build 25.92-b15, mixed mode)moritz
01/23/2023, 1:38 PMNicolas Vannieuwkerke
01/23/2023, 1:38 PMNicolas Vannieuwkerke
01/23/2023, 3:07 PM./gradlew exportClasspath inside the nextflow directory 😁Nicolas Vannieuwkerke
01/23/2023, 3:08 PM> Task :plugins:nf-azure:copyPluginLibs FAILED
FAILURE: Build failed with an exception.
* What went wrong:
Execution failed for task ':plugins:nf-azure:copyPluginLibs'.
> Could not resolve all files for configuration ':plugins:nf-azure:runtimeClasspath'.
> Could not resolve net.minidev:json-smart:[1.3.1,2.3].
Required by:
project :plugins:nf-azure > com.microsoft.azure:azure-batch:10.0.0 > com.microsoft.azure:adal4j:1.6.5 > com.nimbusds:oauth2-oidc-sdk:6.5
> Failed to list versions for net.minidev:json-smart.
> Unable to load Maven meta-data from <https://repo.eclipse.org/content/groups/releases/net/minidev/json-smart/maven-metadata.xml>.
> Could not GET '<https://repo.eclipse.org/content/groups/releases/net/minidev/json-smart/maven-metadata.xml>'. Received status code 503 from server: Service Unavailable
* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.
* Get more help at <https://help.gradle.org>
BUILD FAILED in 5s
22 actionable tasks: 1 executed, 21 up-to-datemoritz
01/23/2023, 3:08 PMNicolas Vannieuwkerke
01/23/2023, 3:09 PMJúlia
01/23/2023, 3:11 PM./gradlew exportClasspath?Nicolas Vannieuwkerke
01/23/2023, 3:11 PMJúlia
01/23/2023, 3:28 PM./gradlew check
5. add includeBuild('../nextflow') to settings.gradle
6. ./gradlew compileGroovy
7. and run the pipeline with ./launch.sh
But I can’t remember if I had more problems at the beginning and changed someone from my configuration 🤔 maybe someone has another idea?Nicolas Vannieuwkerke
01/23/2023, 3:30 PMNicolas Vannieuwkerke
01/23/2023, 3:30 PM./gradlew check I get this ⬆️Nicolas Vannieuwkerke
01/23/2023, 3:31 PMNicolas Vannieuwkerke
01/24/2023, 8:29 AM