Thiseas C. Lamnidis
01/16/2026, 11:00 AMnf-test test --profile +docker --tag test , the test is completed successfully.
However, when the commits get tested by the GA the GATK UnifiedGenotyper module fails: https://github.com/nf-core/eager/actions/runs/21064061754/job/60577190179?pr=1164.
Is there a way to get the files from the runner, so I can debug more effectively?
Is there some obvious way in which the runners differ from the codespace environment that could explain this behaviour? 🙈Thiseas C. Lamnidis
01/22/2026, 8:12 AM