I am trying to run nf-core/scrnaseq pipeline and g...
# help
a
I am trying to run nf-core/scrnaseq pipeline and get error below. I am running nextflow version 25.04.6. I tried to install the plugin via which also errors out
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nextflow plugin install nf-amazon@3.4.3
Downloading plugin nf-amazon@3.4.3
ERROR ~ Plugin nf-amazon with version @3.4.3 does not exist in the repository
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Feb-05 09:26:29.113 [main] DEBUG n.v.parameters.ParameterValidator - Starting parameters validation
Feb-05 09:26:29.210 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /project/6019283/OBCF/active/ehsan_habibi/borzoi/src/small.csv
Feb-05 09:26:29.248 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'small.csv' passed!
Feb-05 09:26:29.250 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-amazon version: 3.4.3
Feb-05 09:26:29.252 [main] INFO  nextflow.plugin.PluginUpdater - Downloading plugin nf-amazon@3.4.3
Feb-05 09:26:29.301 [main] WARN  nextflow.file.FileHelper - Unable to start plugin 'nf-amazon' required by <s3://ngi-igenomes/igenomes/>
org.pf4j.PluginRuntimeException: Plugin nf-amazon with version @3.4.3 does not exist in the repository
        at org.pf4j.update.UpdateManager.findReleaseForPlugin(UpdateManager.java:335)
        at org.pf4j.update.UpdateManager.downloadPlugin(UpdateManager.java:268)
a
i'm having the same issue even when i use just
nextflow plugin install nf-amazon
. i looked at the nf-amazon repo and saw the latest tag was 3.1.0 -- but when i tried
nextflow plugin install nf-amazon@3.1.0
i got the same error for 3.1.0
a
I downloaded nextflow on my local computer and installed the plugin required, transferred it to the server where all plugins exist and this worked for me