we used to have

monochrome_logs

as param, which seems to now be part of nf-schema as

monochromeLogs

does someone already have an example pf how to deal with that?

This is now a configuration option because it seems more logical to set it as a global configuration for systems that don't support colored logs. You can still pass a parameter to that option if you prefer the parameter option 🙂

Ah ok, what about some of the others?

--help

works implicitly. And I guess for the template we would then not have those as params anymore? I am still trying to clean up this PR https://github.com/nf-core/sarek/pull/1478/files and just sort of want to see how far along we are for the migration already

--help

,

--helpFull

and

--showHidden

are the only parameters supported by the plugin now, all other things have been converted to config options

smart, should have thought of that

feel free to ask me if you any questions

ok I think I sorted through most of it: https://github.com/nf-core/sarek/pull/1478/files does this look alright to you? I cuoldn't get the

bforeText

and

summary

to work though in the nextflow config. Is that working for you?

Is it also not working if you copy paste the text from the tools PR?

ahah that works 🙂

it's false by default so no need to set it 😛