Hi <@U032S9298G6>: We just encountered this proble...
# nextflow-pluginsa
Anders Sune Pedersen
10/27/2023, 7:19 PMHi @Ben Sherman: We just encountered this problem with Sarek v3.3.2:
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Config setting `prov.formats` is required to specify provenance output formatsb
Ben Sherman
10/27/2023, 7:24 PMProbably yes. I'm guessing sarek is using a minimal nf-prov config, instead it should use a more explicit configuration as shown here: https://github.com/nextflow-io/nf-prov/blob/master/nextflow.config
Ben Sherman
10/27/2023, 7:24 PMI will make a patch release to make that error a warning, sorry for the inconvenience
a
Anders Sune Pedersen
10/27/2023, 7:25 PMNo problem for me personally as I'm not running production 😆
Anders Sune Pedersen
10/27/2023, 7:25 PMWe do have this in Sarek:
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plugins {
id 'nf-validation' // Validation of pipeline parameters and creation of an input channel from a sample sheet
id 'nf-prov' // Provenance reports for pipeline runs
}Anders Sune Pedersen
10/27/2023, 7:26 PMI guess a quick fix for users could be
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-plugins nf-plov@1.1.0b
Ben Sherman
10/27/2023, 7:26 PMyes, for the next few minutes 😄
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Anders Sune Pedersen
10/27/2023, 7:27 PMOk, I didn't realise you were about to fix it 🙂
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Ben Sherman
10/27/2023, 7:35 PMok should be fixed now
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Anders Sune Pedersen
10/27/2023, 7:41 PMYes, I now only get a warning:
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Downloading plugin nf-prov@1.2.1
WARN: Config setting `prov.formats` is not defined, no provenance reports will be producedAnders Sune Pedersen
10/27/2023, 7:42 PMThanks for the prompt handling of this issue 👌
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Ben Sherman
10/27/2023, 7:44 PMcountless sarek runs around the world mysteriously break and start working again
😅
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Anders Sune Pedersen
10/27/2023, 7:47 PMMaxime may have choked on his Aperol this evening 😆
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