Hi there, I am interested in testing out `nf-bigqu...
# nextflow-plugins
u
Hi there, I am interested in testing out
nf-bigquery
plugin. When I follow the README and add the plugin to my nextflow.config
Copy code
plugins {
    id 'nf-bigquery'
}
I get
ERROR ~ Cannot find latest version of nf-bigquery plugin
In the
nf-sqldb
github repo, I see
nf-bigquery
is wrapped into
nf-sqldb
, but when you inspect the
nf-sqldb@0.5.0 release
, bigquery is missing which makes sense why I get the can't find
nf-bigquery plugin
because in the plugins.json it points to the
nf-sqldb@0.5.0 release
url and not the master url which has the
nf-bigquery plugin
Has anyone successfully downloaded and used the nf-bigquery plugin? If so, what steps did you follow to download and use it?
j
it seems nf-bigquery was never released (so nor included in the official plugin list). Maybe you can create an issue in the nf-sql repo requesting release the version 0.0.1 In case you want to test in your local you can follow theses steps: (java installed is required) - clone the repo into a folder - cd folder - ./gradlew copyPluginZip -x test - unzip plugins/nf-bigquery/build/libs/nf-bigquery-0.0.1.zip -d $HOME/.nextflow/plugins/nf-bigquery-0.0.1 - fix a typo in the documentation. The nextflow.config needs to specify plugin version
Copy code
plugins {
    id 'nf-bigquery@0.0.1'
}
- run your pipeline
❤️ 1
u
Thanks @Jorge I’ll give it a try and put in an issue in the repo 🙂