I’m thinking of pushing a version update of the `s...
# team-maintainersm
Matthias De Smet
02/03/2026, 1:06 PMI’m thinking of pushing a version update of the
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Rike Hanssen
02/03/2026, 1:07 PMshared a GIF
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Rike Hanssen
02/03/2026, 1:09 PMalso
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Nicolas Vannieuwkerke
02/03/2026, 1:12 PMshared a GIF
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Simon Pearce
02/03/2026, 1:37 PMAre there other samtools PRs currently open, before you do?
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Matthias De Smet
02/03/2026, 1:38 PMYeah, I think @Jonathan Manning is working on several topic conversions
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Simon Pearce
02/03/2026, 1:40 PMI think they are all merged by the looks of it
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Jonathan Manning
02/03/2026, 1:40 PMNo, I'm done now, last one merged, moving on to other module
Jonathan Manning
02/03/2026, 1:40 PMI was only interested in the ones related to rnaseq
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Matthias De Smet
02/03/2026, 1:42 PMI haven’t started any of the work yet, just wanted to see if I could get away with another bulk update
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Simon Pearce
02/03/2026, 1:44 PMit may be easier if all the modules have been updated to topics, then you could find&replace for the string and not rerun the tests
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Matthias De Smet
02/03/2026, 1:44 PMgood point 🤔
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Louis Le Nézet
02/03/2026, 2:13 PMI can update some if you want that I use:
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Simon Pearce
02/03/2026, 2:17 PMI think there are 21/34 still remaining
Simon Pearce
02/03/2026, 2:48 PMsplitheader: https://github.com/nf-core/modules/pull/9859
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Simon Pearce
02/03/2026, 2:54 PMshared a GIF
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Simon Pearce
02/03/2026, 2:55 PMl
Louis Le Nézet
02/03/2026, 3:02 PMNew one here:
https://github.com/nf-core/modules/pull/9861
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Simon Pearce
02/03/2026, 3:04 PMCan we use
samtools version | sed '1!d;s/.* //'👍 1
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Louis Le Nézet
02/05/2026, 2:39 PMAll samtools modules does now use topics !
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Matthias De Smet
02/05/2026, 2:45 PMNice work! #C05AHQPA9A7
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