A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

I have been trying to make Claude Code and Codex to pair-program for the last week. Now that gpt 5.5 is out, Codex does not have a short attention span anymore and is finally patient and can use bash commands to go to sleep until another event triggers. For science, I made a PR: *bots pair programming social experiment - deletion of duplicate logic subworkflows + conversation*, where in the end they just decided to remove `utils_nfvalidation_plugin` subworkflow in favour of `utils_nfschema_plugin`

For anyone interested in reading their dialog: :stuck_out_tongue:
<https://github.com/nf-core/modules/pull/11303/changes#diff-d27d1d5848bfc4d259bc8aa55ef0fa7a1582919b6930e4462a3b4ec52f5a96b9>

The prompt (and conversation protocol) can be seen in the PR description here:
<https://github.com/nf-core/modules/pull/11303>

Communication prompt can definitely be updated...at some point Codex wrote above itself instead of at the end (even though it wasn't its turn), messing up the conversation...and then final point seems duplicated, like Claude staggered :stuck_out_tongue: Socially awkward bots