Famke Bäuerle
02/12/2026, 4:49 PMsaveAs: { filename -> filename.equals('versions.yml') ? null : filename },Maxime Garcia
02/12/2026, 4:53 PMFamke Bäuerle
02/12/2026, 5:00 PMwithName: 'SORT_CALLED_CHUNKS' {
ext.args = { '--output-type z --write-index=tbi' }
publishDir = [
mode: params.publish_dir_mode,
path: { "${params.outdir}/variant_calling/" },
saveAs: { params.varlociraptor_chunk_size > 1 ? null : "varlociraptor/${meta.id}/${it}" }
]
}Famke Bäuerle
02/12/2026, 5:01 PMsaveAs: { params.varlociraptor_chunk_size > 1 ? null : "varlociraptor/${meta.id}/${it}" } is not allowed because of the it but no matter what I change its still highlightedMaxime Garcia
02/12/2026, 5:02 PMFamke Bäuerle
02/12/2026, 5:03 PM