Hey everyone, When running

rnasplice

, anyone encountered

MULTIQC

errors, like this:

Process `NFCORE_RNASPLICE:RNASPLICE:MULTIQC` declares 6 input channels but 4 were specified

 -- Check script 'rnasplice/./workflows/rnasplice.nf' at line: 793 or see '.nextflow.log' file for more details

I'm currently using

1.0.4

version. And also, this is after

nf-core modules update --all

command: https://nf-co.re/docs/nf-core-tools/modules/update. When investigating, ChatGPT suggested that it might have something to do with these lines (they’re around line 793):

MULTIQC (
       ch_multiqc_files.collect(),
       ch_multiqc_config.toList(),
       ch_multiqc_custom_config.toList(),
       ch_multiqc_logo.toList()
   )

I'm pretty sure you updated some modules in your pipeline installation to versions that are incompatible with the pipeline. This command is intended for developers, who can then fix the fallout and release a new version of the pipeline. As an enduser, if you want to run the latest (sometimes broken) bleeding edge of a pipeline, you can do that with

nextflow run nf-core/<pipeline> -r dev ...

or downloading the

dev

version with

nf-core download -r dev <other options> nf-core/<pipeline>

.

@Thomas Danhorn Got it. Then yeah, I'll leave alone

nf-core modules update

or

nf-core modules update --all

commands. Thanks for giving me this insight!! ❤️