Hi, all. Can anybody explain what data cellbender ...
# scrnaseq
s
Hi, all. Can anybody explain what data cellbender remove-background uses as input when using simpleaf/alevin in USA-mode as aligner? I'm assuming that the unspliced (U), spliced (S) and ambiguous (A) counts are summed up to get a "total" count matrix that is then used as input for cellbender, but I could not find any documentation on that.