Hi. I have ONT reads (50x depth) and Illumina read...
# bacass
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Hi. I have ONT reads (50x depth) and Illumina reads (30x) from WGS of a bacterial strain for genome assembly. I see that nf-core has two assembly pipelines: bacass and genomeassembler. Both has the hybrid option: assembly from long reads + polishing by short reads. Which one is better for my purpose, or they are kind of equivalent for this use case?
d
bacass is for small genomes, genomeassembler rather for eucaryotes, afaik. But why not test both...
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