Juliana Assis
02/09/2026, 1:51 PMdeseq2_min_replicates_for_replace
'minReplicatesForReplace' parameter passed to DESeq()
Type expected for this parameter's value (null) is different from the one defined in the pipeline schema. Must be a number.
the minimum number of replicates required in order to use replaceOutliers on a sample. If there are samples with so many replicates, the model will be refit after these replacing outliers, flagged by Cook's distance. Set to Inf in order to never replace outliers. It set to Inf for fitType="glmGamPoi".
So, I'm inventing a number here to avoid it:
--deseq2_min_replicates_for_replace 1000000
Is it ok to do? Why I can't pass minRep Inf? And null does not mean the same.