HI, i am traing to use proteinfold 1,1,1 with alph...
# proteinfoldp
Pau Marc Muñoz Torres
02/10/2026, 12:48 PMHI, i am traing to use proteinfold 1,1,1 with alphafold but i can download the singularity image quay.io-nf-core-proteinfold_alphafold2_standard-1.1.1.img, and not other image for alphafold is download. what can i do? thanks
j
Jose Espinosa-Carrasco
02/10/2026, 1:06 PMhi, how are you downloading the image? I can see this tag is in
<http://quay.io|quay.io>Jose Espinosa-Carrasco
02/10/2026, 1:09 PMI mean the tag corresponding to the image you are mentioning in your message:
proteinfold_alphafold2_standard:1.1.1p
Pau Marc Muñoz Torres
02/10/2026, 1:13 PMjust tring to do nf-core pipelines download proteinfold --revision 1.1.1 --outdir cache_sarek --container-system singularity --parallel-downloads 10 --force
j
Jose Espinosa-Carrasco
02/10/2026, 1:37 PMUmm, it does not work either for me but it seems to be a problem with tools, not sure though
Would you mind posting which error are you getting?
Jose Espinosa-Carrasco
02/10/2026, 1:38 PMIn the mean time you can download the image directly using this command:
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apptainer pull --disable-cache --name quay.io-nf-core-proteinfold_alphafold3_standard-1.1.1.img <docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1> > /dev/nullJose Espinosa-Carrasco
02/10/2026, 1:39 PM*substitute
apptainersingularityp
Pau Marc Muñoz Torres
02/10/2026, 1:39 PMulling singularity images ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0% • 0/7 tasks completed
nf-core/proteinfold_alphafold2_split:1.1.1 INFO: Creating SIF file... ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ERROR "nf-core/proteinfold_alphafold2_split:1.1.1" failed for unclear reasons.
INFO Pulling of "nf-core/proteinfold_alphafold2_split:1.1.1" failed.
Please troubleshoot the command
"singularity pull --name /home/pau/.apptainer/tmprk53v66l/tempfile docker://quay.io/nf-core/proteinfold_alphafold2_split:1.1.1" manually.
ERROR "nf-core/proteinfold_alphafold2_split:1.1.1" failed for unclear reasons.
ERROR Pulling of "nf-core/proteinfold_alphafold2_split:1.1.1" failed.
Please troubleshoot the command
"singularity pull --name /home/pau/.apptainer/tmprk53v66l/tempfile docker://quay.io/nf-core/proteinfold_alphafold2_split:1.1.1" manually.
Processing container images ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0% • 0/7 tasks completed
Pulling singularity images ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╸━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 29% • 2/7 tasks completed
nf-core/proteinfold_alphafold2_standard:1.1.1 INFO: Creating SIF file... ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ERROR "nf-core/proteinfold_alphafold2_standard:1.1.1" failed for unclear reasons.
INFO Pulling of "nf-core/proteinfold_alphafold2_standard:1.1.1" failed.
Please troubleshoot the command
"singularity pull --name /home/pau/.apptainer/tmp9hywxic3/tempfile docker://quay.io/nf-core/proteinfold_alphafold2_standard:1.1.1" manually.
ERROR "nf-core/proteinfold_alphafold2_standard:1.1.1" failed for unclear reasons.
ERROR Pulling of "nf-core/proteinfold_alphafold2_standard:1.1.1" failed.
Please troubleshoot the command
"singularity pull --name /home/pau/.apptainer/tmp9hywxic3/tempfile docker://quay.io/nf-core/proteinfold_alphafold2_standard:1.1.1" manually.
keanu thanks 2
Pau Marc Muñoz Torres
02/10/2026, 1:41 PMapptainer pull --disable-cache --name quay.io-nf-core-proteinfold_alphafold3_standard-1.1.1.img docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1
WARNING: SINGULARITY_CACHEDIR and APPTAINER_CACHEDIR have different values, using the latter
FATAL: While making image from oci registry: error fetching image to cache: failed to get checksum for docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1: reading manifest 1.1.1 in quay.io/nf-core/proteinfold_alphafold3_standard: manifest unknown
(base) pau@pau-ProArt-P16-H7606WI-H7606WI:~$ singularity pull --disable-cache --name quay.io-nf-core-proteinfold_alphafold3_standard-1.1.1.img docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1
WARNING: SINGULARITY_CACHEDIR and APPTAINER_CACHEDIR have different values, using the latter
FATAL: While making image from oci registry: error fetching image to cach
Pau Marc Muñoz Torres
02/10/2026, 1:41 PMapptainer pull --disable-cache --name quay.io-nf-core-proteinfold_alphafold3_standard-1.1.1.img docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1
WARNING: SINGULARITY_CACHEDIR and APPTAINER_CACHEDIR have different values, using the latter
FATAL: While making image from oci registry: error fetching image to cache: failed to get checksum for docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1: reading manifest 1.1.1 in quay.io/nf-core/proteinfold_alphafold3_standard: manifest unknown
(base) pau@pau-ProArt-P16-H7606WI-H7606WI:~$ singularity pull --disable-cache --name quay.io-nf-core-proteinfold_alphafold3_standard-1.1.1.img docker://quay.io/nf-core/proteinfold_alphafold3_standard:1.1.1
WARNING: SINGULARITY_CACHEDIR and APPTAINER_CACHEDIR have different values, using the latter
FATAL: While making image from oci registry: error fetching image to cach
j
Jose Espinosa-Carrasco
02/10/2026, 1:46 PMYes, sorry I mixed up two different images (as I didn't test the command before sending it) should be alphafold2 and not 3:
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apptainer pull --disable-cache --name quay.io-nf-core-proteinfold_alphafold2_standard-1.1.1.img <docker://quay.io/nf-core/proteinfold_alphafold2_standard:1.1.1>p
Pau Marc Muñoz Torres
02/10/2026, 1:47 PMnow is working
👍🏻 1