Javan Okendo
01/16/2026, 2:20 PMexport NCBI_SETTINGS="$PWD/user-settings.mkfg"
retry_with_backoff 5 1 100 \
prefetch \
\
SRR35463766
[ -f SRR35463766.sralite ] && vdb-validate SRR35463766.sralite || vdb-validate SRR35463766
cat <<-END_VERSIONS > versions.yml
"NFCORE_FETCHNGS:SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH":
sratools: $(prefetch --version 2>&1 | grep -Eo '[0-9.]+')
END_VERSIONS
Command exit status:
0
Command output:
Download of some files was skipped because they are too large
You can change size download limit by setting
--min-size and --max-size command line arguments
Command error:
WARNING: Not virtualizing pid namespace by configuration
2026-01-15T20:17:43 prefetch.3.0.8: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2026-01-15T20:17:43 prefetch.3.0.8 warn: Maximum file size download limit is 20GB
2026-01-15T20:17:43 prefetch.3.0.8: 1) 'SRR35463766' (26GB) is larger than maximum allowed: skipped
2026-01-15T20:17:43 vdb-validate.3.0.8 info: 'SRR35463766' could not be found
ls: cannot access 'SRR35463766': No such file or directoryFelix Krueger
01/19/2026, 1:07 PMprocess {
withName: SRATOOLS_PREFETCH {
ext.args = '--max-size 200g'
}
}