Hello spatialvi team. I am testing your pipeline ...
# spatialvi
u
Hello spatialvi team. I am testing your pipeline for Visium HD data. I have a question: Is it possible to pass multiple hd bins resolutions per sample? At the moment I used this workaround of launching three different runs. Thank you
e
Hi, Federico! It is currently only possible to use one bin size per run, so your current strategy is the correct one. I assume by the phrasing of your question that having more than one (or all three) at the same time would be something you're interested in? In terms of run-time any kind of implementation would be the same as it is currently.
u
Hey thanks for your answer. I have some collaborators that usually want to see all three levels of resolution and evaluate the best one for downstream analysis. Anyway I can implement a script to run three separate runs. I was just checking if there was an implemented way thank you